One allowance per edge
Seam allowance is a per-edge value: a rectangle has two seams on each dimension, so the calculator doubles the allowance before it touches the finished size. A 10 in side at 5/8 in gains 1 1/4 in total, never 5/8 in. The number you enter must be the single-edge width, the distance from the stitching line to the cut edge.